I just install all natural weather and the plugs were : real lights, ew+nw+aws , all natural indoor weather filter. The question is, i was looking for the enhanced seasons part when downloading it it never asked me a question. Is it still there
No. It is available as http://www.tesnexus.com/downloads/file.php?id=27972.
also woudl like to use all natural water and habiat by Max Tael but it never asked me that either.
Those sections of the Natural Weather mod are not included in All Natural; get them from http://www.tesnexus.com/downloads/file.php?id=2536 (but don't use Natural Weather itself, just the two optional extras you named). You might also be interested in the http://tesnexus.com/downloads/file.php?id=10257.
Also the patch for rebuilt Kvatch never showed
Do you have Kvatch Rebuilt installed? If not (and apparently you don't), the patch for it won't be installed (because why would AN install a patch for a mod not in your load order?). Install Kvatch Rebuilt, then deactivate and reactivate the AN omod.