For some reason, I kill Manny Vargas in every single game. Funny enough, I usually put a bunch of C-4 around his bed and go in the corner and BOOOOM!!!! Something about that message on his computer always rubbed me the wrong way.
I also always kill Old Lady Gibson. I regretted it the first time because I like Nuka Cola Trucks, but now I always want that special Sawed-Off she has so bad that I just cap her.