My Megaton home had a place for everything and everything in its place.
Lockers to the left of the door: Weapons
Lockers across the room: Clothing
Fridge: Food, Water, Nuka-Cola, Blood Packs, and Chems
Bedroom Desk: Impersonal miscellaneous objects
Bedroom File Cabinet: Personal miscellaneous objects (Pre-War Books, Pre-War Money, Teddy Bears, Baseballs, Medical Clipboard [Miss you, Dad], My Brain Piece, Billiard Balls, Declaration of Independence, Bill of Rights, Magna Carta, Lincoln Memorabilia, and Vault 101 gear).
I also kept Dogmeat in the hall (with a dog bowl for food), the huge Teddy Bear on my bed, a Chessboard, a few books, a lunchbox, and a toy car on my desk, and my BB Gun from 101 propped against my bed.
I hope Fallout 4 has a better system for placing items than Skyrim or Fallout 3 did.