None of those things you described are a plot hole. One is an oversight in the writing, the other, whilst annoying, is hardly a hole. I guess Dad kinda assumed since you were there and took an interest maybe you'd want to help with some simple stuff that didnt take a scientist... I mean come on, changing a fuse? Turning on a computer? When Dr Li has a whole lab to get back up and running...
Uh yes they are. And there are a number of other things I could sit listing but im sure everyone knows them by now.
The quest writing, dialogue writing, and overall central story writing is atrocious. Jesus I think a 10 year old could write better than whats in this game seriously.
Dad resists the Enclave who he couldnt possibly know who they are for no apparent reason. In reply the Enclave blows off Dr Janices head which is equally inexplicable. The further stupidity ensues when Dad decides to blow up the control room and irreversibly irradiate it to prevent the Enclave from getting at it, again I should point out apart from killing Dr Janice due to his resistance he has no idea who these people are.
He knows and wants you the player to finish what he started. So basically after going to all the effort of keeping his precious child safe he consigns both himself and his kid to stupid pointless unnecessary deaths.
The way you talk Eden into blowing himself up is also stupid. I mean come on, one line and Eden goes from "oh lets wipe out capital wasteland life" to "omg! this is against my programming i must self destruct!"
And the way Autumn inexplicably rebels. Why? What the hells the point?
Apparently he disagree's with President Eden's directives about slaughtering all of the humans, ghouls, and Metahumans in the Capital Wasteland. Again why? The Enclave views all non Vaulters, and non Enclave humans as a sub species only worthy of death. Where does the sudden change in attitude come from?
If it was so easy to change Edens mind about his actions if Autumn truely felt that Edens actions were wrong why didnt he talk him out of them? I mean it takes the player ONE LINE to get Eden to kill himself over it.
Surely Autumn who is a trusted friend and subordinate would have an easier time of it?
Then there is the weird appearance of both the Deathclaws and the Super Mutants.
Death Claws are more hunched and a little more ferocious looking.
And super mutants HAVE BOTH GENDERS! This super mutants are suddenly sixless entirely is idiotic; they were never sixless they were STERILE theres a difference. And they are green.
Again I could continue on but im tired of saying it and people are probably tired hearing it. And Bethesda doesnt listen and doesnt care.