Ooops! Im one of the wiki editors for that guide, and looks like we missed a step. There should indeed be another step that instructs you to turn off free camera mode by typing tfc in the console again. Thanks for pointing that out DudeNTheRoom!
And yep, tfc is only used to cut down the waiting time for 31 days to pass, its not essential. You could also read a book or watch paint dry while waiting 10 minutes

And PhonAntiPhon is absolutely correct. At the moment there is no way to 100% clean your savegame
if you uninstalled mods that use scripts. The clean procedure will reset all spawns (both mob, npc, and item), as well as reset all cells. This helps because it can reduce bloat, and if there is a poorly rendered cell or a bugged spawn it can eliminate those as well. It can somewhat help with the script issues, but only for instance if an item with a modded scripts exists in a cell. Resetting the cell can get rid of that item sometimes, reducing the polling of the leftover scripts. However, the leftover script will still be in your savegame. Bethesda designed papyrus this way in Skyrim, it wasnt like this in Oblivion.
So in case its a massive script issue, your best best is to do as PhonAntiPhon advises.