For me, I realize that if the King did not exist, I'd certainly support Mr. House without a doubt. I've had discussions on this forum before where I say that anarchy, imo, will NOT always work and it needs the proper cultural influences to work. The King, to me, is a big part of why I believe anarchy in the Mojave could manage to work; his basic ideals are very fair, humane and, had they existed within the leaders of nations during the Great War, could've prevented the Great War altogether. For me, yes, the King's moral compass is more important for the people than Mr. House's ingenius ideas. I realize it's possible to keep both, but I also....it doesn't sit with me right, knowing that you have to murder a COMPLETELY innocent woman and her troop, all for doing what? For trying to help. I don't believe in "ranking" Elizabeth Kieren, the King and Mr. House in matter of importance; that to me is kind of sick. No, House is the one that refuses to play ball with the other two, and he should NOT be allowed to basically force Kieren's death just because he's powerful and influencial.
But yes, without a doubt if the King did not exist, I'd support Mr. House. Knowing that he's there though and believing his ideals to be rather spot-on morally and believing they DEFINITELY deserve a chance to live on and grow, I simply can't let House live.
The NCR, knowing how corrupt and similar they are to the old world government is the deal-breaker. If I support the NCR, I simply don't feel like I've truly accomplished jack. The moment I'm gone, they'll just go back to the same old problems they had before I arrived. Even IF the Mojave makes it out ok, the NCR will still be corrupt. In that sense, Indy and House offer better options, allowing me to swat the NCR on the nose and slap them into shape a bit by showing them that no, their current way of doing things is NOT enough.
Caesar I can respect, but I'm simply incapable of going through with his crueler methods.