You do bring up a valid point, but what proof do we have that the Enclave would have been better? Autumn's methods are still harsh, but he doesn't follow the Enclave's traditional plan. In the same sense that Lyon's detachment doesn't represent the BoS, I would say Autumn doesn't represent the Enclave. If these discussions are to be about the Enclave, then their plot can't be ignored. Autumn is a completely different story. I see Autumn as truly of pure intentions, but he still goes about it too harshly. Regardless, in the end, Autumn either dies or wanders off never to be heard from again. The Enclave is a brutal group. The soldiers follow their leader obediently and without question, not truly seeming to understand what it is they are doing. Autumn's soldiers were most likely limited within the Enclave. He could have taken control, but still would have been too harsh and would have become distant enough from the tradtitional Enclave's plans that he and his group could not be considered the traditional, shadow government Enclave. The Enclave was behind the Great War and the Vault Experiments. the true Enclave should not be permitted the title of heroes, but neither should the BoS. The wasteland doesn't actually have many heroes, but if the CW did, it would be the Lone Wanderer and James, but not the Enclave and not the BoS. The true BoS are definitely not good, but neither are the Enclave. They are opposing forces, but neither is truly capable of accomplishing what they want.
Well, look at it like this, Eden
and Autumn has his
Spoiler Destructing code, ready to be used if Eden is ever getting out of hand
so no matter what, Autumn's ways will be what come to fruition (if the Enclave won) in the end.
And if the Enclave did win, with or without Eden, the water would still be getting to all the people of the wastes, wile those people will have to be dependant on the Enclave, is that a bad thing? at least they WILL all be getting their water for sure and not playing roulett with the rivet city guards and having a good 60% of people missing out completely.
Also, the wastes would be a better place generally. No more super mutants, meaning the capitol oculd be re built. no more giants insects, capable of killing whole families, less human mutation, deseas and poor health, as the enclave has some pretty descent medicen supply's riveling the contolled vaults. So the people have to salute the Enclave and what they reprisent, so what? It's A generally better life, and all the BoS is doing is standing in their way.