Below is the last known mod list I was using. It's a number of months old, so I'm not 100% it's the setup I was using when I was experiencing the problems. Unfortunately I got frustrated with the bug and put the game up for a while. Hopefully you wizards can figure it out and let me get back into the game.
Spoiler
Active Mod Files:00 Fallout3.esm01 Anchorage.esm02 ThePitt.esm03 StreetLights.esm04 BrokenSteel.esm05 PointLookout.esm06 Zeta.esm07 Destruction.esm08 aHUD.esm09 iHUD.esm0A CRAFT.esm0B CALIBR.esm [Version 1.4]0C xCALIBR.esm0D Project Beauty.esm0E CubeExperimental (EN).esm0F Mothership Crew.esm [Version 1.6]10 Advanced Recon Tech.esm11 Apocalypse Armory.esm12 FO3 Wanderers Edition - Main File.esm13 Marts Mutant Mod.esm14 Enhanced Weather - Rain and Snow.esm15 Xephas Dynamic Weather.esm16 DCInteriors_ComboEdition.esm17 Detect Traps.esm18 DarNifiedUIF3.esp** Project Beauty- Broken Steel.esp** Project Beauty- Point Lookout.esp19 DynamicCrosshair.esp1A CASM.esp1B Agatha Radio Enhanced.esp1C Enclave Radio Enhanced.esp1D GNR Enhanced.esp1E Ex Libris - PreWar Book Titles.esp1F Detect Traps - The Traponator 4000.esp++ Detect Traps - Perk.esp++ Detect Traps - DLC.esp20 NotSoFast.esp [Version 1.07]21 HeirApparent.esp [Version 1.81]22 IntoTheDeepWoods.esp [Version 1.061]23 PLweightadjust.esp [Version 1.08]24 PLFewerItems.esp++ Destruction - Main.esp25 Destruction - Main - Statics.esp++ Destruction - DLC.esp26 Destruction - DLC - Statics.esp27 BusworldV1.05d.esp28 CrowdedCities_v2.esp29 DCInteriors_DLC_Collectables.esp2A Megaton House and Theme Overhaul.esp2B megalight.esp2C Apocalypse Armory.esp2D Apocalypse Armory - CALIBR.esp++ Apocalypse Armory - xCALIBR.esp2E Apocalypse Armory - DLC Enhancements.esp2F FO3 Wanderers Edition - Main File.esp30 FO3 Wanderers Edition - DLC Anchorage.esp31 FO3 Wanderers Edition - DLC The Pitt.esp32 FO3 Wanderers Edition - DLC Broken Steel.esp33 FO3 Wanderers Edition - DLC Point Lookout.esp34 FO3 Wanderers Edition - DLC Mothership Zeta.esp35 FO3 Wanderers Edition - Alternate Travel.esp36 FO3 Wanderers Edition - Optional VATS Halftime.esp++ FO3 Wanderers Edition - Project Beauty (Followers Enhanced).esp37 Refurbishes [ALL].esp38 WeaponModKits.esp39 WeaponModKits - FWE Master Release.esp3A WeaponModKits - OperationAnchorage.esp3B WeaponModKits - ThePitt.esp3C WeaponModKits - BrokenSteel.esp3D WeaponModKits - PointLookout.esp3E WeaponModKits - Zeta.esp++ Apocalypse Armory + WMK.esp3F Advanced Recon Armor.esp40 Advanced Recon Gear.esp41 Advanced Recon Tech.esp++ Advanced Recon Tech - Detect Traps.esp42 Advanced Recon Range Finder.esp43 ImmersiveHealth.esp44 Marts Mutant Mod.esp45 Marts Mutant Mod - DLC Anchorage.esp46 Marts Mutant Mod - DLC The Pitt.esp47 Marts Mutant Mod - DLC Broken Steel.esp++ Marts Mutant Mod - DLC Point Lookout.esp48 Marts Mutant Mod - DLC Zeta.esp++ Marts Mutant Mod - Zones Respawn.esp++ Marts Mutant Mod - Master Menu Module.esp49 Marts Mutant Mod - FWE Master Release.esp++ Marts Mutant Mod - FWE Master Release + DLCs.esp4A Marts Mutant Mod - FWE Master Release + Project Beauty.esp4B DWCRedux.esp4C FasterMorePowerfulMines.esp [Version 1.0]4D dD - Enhanced Blood Main.esp4E Enhanced Weather - Rain and Snow in Fallout.esp4F Enhanced Weather - Weather Sounds in Interiors.esp50 Realistic Interior Lighting.esp51 Realistic Interior Lighting - BS.esp52 Realistic Interior Lighting - OA.esp53 Realistic Interior Lighting - PL.esp54 Xephas Dynamic Weather - Main.esp55 Xephas Dynamic Weather - Anchorage.esp56 Xephas Dynamic Weather - The Pitt.esp57 Xephas Dynamic Weather - Broken Steel.esp58 Xephas Dynamic Weather - Point Lookout.esp59 Xephas Dynamic Weather - Rain.esp5A Xephas Dynamic Weather - Sandstorm.esp5B Xephas Dynamic Weather - Dynamic Sneak Bonus.esp++ Destruction - CP - Fellout.esp++ xCALIBRammo_FWE.esp5C Bashed Patch, 0.esp