After the last patch, all the open fetch quests seem to be broken, including Nick's companion quest Long Time Coming. I go to the locations and pick up the quest items, but the game doesn't register that I have retrieved them. I now have all the Eddie Winter Holotapes, but the game thinks I only have 6/10. The same thing happens when I try to do Moe Cronin's quest and pick up the baseball glove, ball, and card.

Has anyone else had these problems? Is there a fix? I'd be really upset if I can't finish Nick's companion quest!

Update: it did actually recognize one of the tapes I picked up, but still won't recognize that I have all of them. It also still gives me the XP for picking up the baseball, glove and card, but doesn't update the quest and leaves the markets where the items used to be.