If it's the latter then you could alter FOOK to be dependent on your mod, or you could make your mod dependent on FOOK and use the references placed in FOOK.
Fallout3.esmThePitt.esmBrokenSteel.esmPointLookout.esmUnofficial Fallout 3 Patch.esmCALIBR.esmFOOK2 - Main.esmFOOK2 - [[censored]] World And Neighbourhood Kit.esmFOOK2 - [DIK] DLC Improvement Kit.esmUnofficial Fallout 3 Patch - The Pitt.espUnofficial Fallout 3 Patch - Broken Steel.espUnofficial Fallout 3 Patch - Point Lookout.espSlower Degradation (-50%).espFleshBurningPlasma.espUPP - Pack 1.espUPP - Pack 2.espUPP - Quest Perks.espUPP - Experience Perks.espDarNifiedUIF3.espDUIF3Extras.espNoLockTopic.espFOOK2 - Main.espFOOK2 - [DIK] DLC Improvement Kit.espFOOK2 - [censored] Map Markers.espFOOK2 - [EVE] Energy Visuals Enhanced.espTotal active plugins: 25Total plugins: 32
Fallout3.esmThePitt.esmAnchorage.esmBrokenSteel.esmPointLookout.esmZeta.esmCRAFT.esmCALIBR.esmFOOK2 - Main.esmFOOK2 - [DIK] DLC Improvement Kit.esmFOOK2 - [[censored]] World And Neighbourhood Kit.esmFO3 Wanderers Edition - Main File.esmMart's Mutant Mod.esmEnhancedChildren.esmCubeExperimental (EN).esmShadySands.espEnhanced Weather - Rain and Snow.esmUnofficial Fallout 3 Patch.esmFaces in the Wastes.espUnofficial Fallout 3 Patch - The Pitt.espUnofficial Fallout 3 Patch - Operation Anchorage.espUnofficial Fallout 3 Patch - Broken Steel.espUnofficial Fallout 3 Patch - Point Lookout.espUnofficial Fallout 3 Patch - Mothership Zeta.espKTs_Centercamera.espvault92 fix.espDarNifiedUIF3.espDUIF3Extras.espFellout-Full.espFellout-Anchorage.espFellout-BrokenSteel.espFellout-PointLookout.espEnhanced Weather - Rain and Snow in Fallout.espEnhanced Weather - Weather Sounds in Interiors.esp3EFhelmlessstealthsuit.esp3EFdrgplate.esp3EFwandererGear.espRobCo Certified.espUPP - Pack 1.espUPP - Pack 2.espUPP - Experience Perks.espUPP - Quest Perks.espCRAFT - Activation Perk.espCALIBR Ammo Schematics - CRAFT.espFOOK2 - Main.espFOOK2 - [censored] Map Markers.espFO3 Wanderers Edition - Main File.espFO3 Wanderers Edition - Optional No Fast Travel.espFO3 Wanderers Edition - DLC The Pitt.espFO3 Wanderers Edition - DLC Anchorage.espFO3 Wanderers Edition - DLC Broken Steel.espFO3 Wanderers Edition - Lvl 30 Balance.espFO3 Wanderers Edition - UFP Support.espFO3 Wanderers Edition - FOOK Support.espFWE - FOOK DLC Support.espUWWUT.espUWWUT - The Pitt Addon.espUWWUT - Broken Steel Addon.espEVE Beta_0.9.2.espEVE Operation Anchorage.espTribal_DX.espFOOK+FWE+EVE+UWWUT.espLaser Fix.espDree Perks.espDree Perks Requested by Fans .espDree Perks Pitts.espDree Perks Anchorage.espDree Perks Point Lookout.espDree Perks Mothership Zeta.espGalaxyNewsRadio100[M].esppointlookoutmadeeasy.espPLweightadjust.espTailor Maid.espTailor Maid PITT.espTailor Maid Anchorage.espTailor Maid Brokensteel.espTailor Maid Black Retex.espMZAllAccessPass.espBurgerBoyCompound.espTCMdivingsuit.espArmored Vests.espDantesArmor.espGloves.espGeneratorSound.espPanada Essential.espMegatonBombDefuse.espGhoul & Raider Races.espCRBSOR.espFollowersRelax.espPartyColonelNoble.espForce Clear Signal [GNR].espcryolator.espFO3 Wanderers Edition - Hot Clover.espDogmeat Leather Armor - CRAFT.espRivet City Realignment.espPointLookout-nofiring.espPLMotelRoom1G.esp1PipboyPDA.espPipboyLantern.espAcquiredImmunity.espMart's Mutant Mod.espMart's Mutant Mod - DLC Anchorage.espMart's Mutant Mod - DLC The Pitt.espMart's Mutant Mod - DLC Broken Steel.espMart's Mutant Mod - DLC Point Lookout.espMart's Mutant Mod - Hunting & Looting.espMart's Mutant Mod - Natural Selection.espMart's Mutant Mod - Zones Respawn.espMart's Mutant Mod - No Ghoul Raise.espMart's Mutant Mod - FWE Master Release.espFOOK+FWE+PB+MMM.espMMM Fix.esp