So before then I had two mod managers installed. I didn't need both of them, for one is a older version and was taking up space. It was copying everything that I downloaded too ontop of that. So I deleted the duplicate files and deleted the old mod manager, but after all that done my mods haven't been working right. Nor has my game.
Seems the only thing not affected were the texture mods. But mods like the Skyforge or AmazingTweakfollowers.... I even try downloading it seperately off of Nexus rather than steam and I get errors stating that BOSS wasn't found from either Amazing or Skyforge. This means I must've either broken my game or done something.
Worst part is that I deleted all the duplicate files the other night. Wasn't able to get these errors because my computer had issues trying to upload the CK and game. So I shut my system down and reboot it when I woke up. Everything loaded fine and all, but these mods, even my own, seem to be effected.
Did I damage my game?