There is an "option" to protect Followers (does not apply to animals nor conjurations) from friendly fire. It is part of the Blackbooks of the "Dragonborn" Add-On. ["Winds of Change" is the title, it involves the Ebony Mine]
In my plays (15+) on the PS3, Lydia's body NEVER appeared in the Catacombs, I think that is a crome piece of the PC game.
Getting letters of inheirtance is kind of hit and miss. I have gotten letters of dead I never met, and not gotten letters of some I have.
Horses are something else altogether.
In my current play (just started a Special Edition game on the Xbox One "s") I have had two purchased horses begin to walk away from me, as if they were stolen/borrowed. I have found them in the Whiterun Stable. I had to kill them to finally get a horse to stay with me.
If you have the Dawnguard add-on it is worth the trouble to acquire the Ghost Horse.
The horse from the Assissina's Brotherhood is decent but has quirks. It gets jeuolose if you dare to ride another horse; so it will stay were last you left it. But, will physically disappear for exactly One Full Game Week after you have stopped using another horse; you must go back to the exact spot you had left it.
IT does regenerate when killed, back at the pond where it is first found.