I don't have a disease (well, not counting lycanthropy!), and active effects is showing only bonuses. I went back to a previous save and found the same issue, so know I have used shrines, slept, waited etc. in the meantime. It looks like my only option, to save about a LOT of game, is to go back several saves. Most disappointing, particularly because I've no idea why this should be, and the game appears to offer no information.
Any help or advice appreciated.