both are monsters...
one tricked innocent people saying about how safe vaults were and 95% of them were just sick experiments that were just useless because vault-tec seem to been wiped out by the bombs.
the other kidnaps innocent people for their sick researchs like creating supermutants and synths.
i mean, everybody hates the institute just because the synths, imagine if people knew they created the commonwealth supermutants.
the institute may believe they are the future of humanity, but it seems they are it's undoing.
both groups try to play with people's lives as if it's nothing...