I was thinking of trying a merged patch, but I don't know where to start, or if it will even help. Here is my current load order, just to make sure.
[X] Fallout3.esm[X] Anchorage.esm[X] ThePitt.esm[X] BrokenSteel.esm[X] PointLookout.esm[X] Zeta.esm[X] Unofficial Fallout 3 Patch.esm[X] Project Beauty HD version.esm[X] CRAFT.esm[X] CALIBR.esm[X] CRAFT - Workbench and Crafting Expansion combined.esp[X] CRAFTHelper.esm[X] ArefuExpandedByAzar.esm[X] FOOK2 - Main.esm[X] FOOK2 - [[censored]] World And Neighbourhood Kit.esm[X] FOOK2 - [DIK] DLC Improvement Kit.esm[X] Mart's Mutant Mod.esm[X] CubeExperimental (EN).esm[X] Enhanced Weather - Rain and Snow.esm[X] DCInteriors_ComboEdition.esm[X] Destruction.esm[X] Unofficial Fallout 3 Patch - Operation Anchorage.esp[X] Unofficial Fallout 3 Patch - The Pitt.esp[X] Unofficial Fallout 3 Patch - Broken Steel.esp[X] Unofficial Fallout 3 Patch - Point Lookout.esp[X] Unofficial Fallout 3 Patch - Mothership Zeta.esp[X] Project Beauty.esp[X] DarNifiedUIF3.esp[X] Fellout-pipboylight.esp[X] CALIBRxMerchant.esp[X] Auto Aim Fix v1.1.esp[X] GalaxyNewsRadio100[M].esp[X] ArefuExpandedByAzar-Radio.esp[X] UPP - Pack 1.esp[X] UPP - Pack 2.esp[X] Treasure Maps_Underground.esp[X] Treasure Maps_Secrets of the Wasteland.esp[X] Treasure Maps_Bobblehead Edition.esp[X] Treasure Maps_A Fist Full of Caps.esp[X] UndergroundHideout.esp[X] FOOK2 - Main.esp[X] FOOK2 - [EVE] Energy Visuals Enhanced.esp[X] FOOK2 - [DIK] DLC Improvement Kit.esp[X] FOOK2 - [DESTRUCTION] DIK.esp[X] FOOK2 - [DESTRUCTION] DIK - Statics.esp[X] FOOK2 - [DESTRUCTION] Main.esp[X] FOOK2 - [DESTRUCTION] Main - Statics.esp[X] FOOK2 - Mothership Zeta.esp[X] FOOK2 - [DESTRUCTION] Mothership Zeta - Statics.esp[X] FOOK2 - [DESTRUCTION] Mothership Zeta.esp[X] Tailor Maid.esp[X] Tailor Maid Anchorage.esp[X] Tailor Maid PITT.esp[X] Tailor Maid Brokensteel.esp[X] Tailor Maid ZETA.esp[X] CRAFT - Activation Perk.esp[X] WeaponModKits.esp[X] WeaponModKits - OperationAnchorage.esp[X] WeaponModKits - ThePitt.esp[X] WeaponModKits - BrokenSteel.esp[X] WeaponModKits - PointLookout.esp[X] WeaponModKits - FOOK.esp[X] CRAFTHelper_WMK.esp[X] Tactical Weapons-Calibr-V3.esp[X] WMKAA12Shotgun.esp[X] CALIBR Ammo Schematics - CRAFT.esp[X] EVE.esp[X] EVE Operation Anchorage.esp[X] BuildableBots v0.3a.esp[X] RobCo Certified.esp[X] Buildablebots Robcert. addon.esp[X] Mart's Mutant Mod.esp[X] Mart's Mutant Mod - DLC Anchorage.esp[X] Mart's Mutant Mod - DLC The Pitt.esp[X] Mart's Mutant Mod - DLC Broken Steel.esp[X] Mart's Mutant Mod - DLC Point Lookout.esp[X] Mart's Mutant Mod - DLC Zeta.esp[X] Mart's Mutant Mod - No Wanamingos.esp[X] Mart's Mutant Mod - Hunting & Looting.esp[X] Mart's Mutant Mod - Increased Spawns.esp[X] Mart's Mutant Mod - Natural Selection.esp[X] Mart's Mutant Mod - Reduced Wasteland Spawns.esp[X] Mart's Mutant Mod - Tougher Traders.esp[X] Mart's Mutant Mod - Zones Respawn.esp[X] Mart's Mutant Mod - FOOK2.esp[X] Mart's Mutant Mod - FOOK2 - DIK.esp[X] Arwen_Armor.esp[X] Arwen_Localized_Damage.esp[X] Arwen_SmarterAI.esp[X] Arwen_Survival.esp[X] Arwen_Tweaks_Main.esp[X] Arwen_Weapons.esp[X] Owned!.esp[X] Enhanced Weather - Rain and Snow in Fallout.esp[X] Enhanced Weather - Radioactive Rain and Snow Plugin.esp[X] Enhanced Weather - Weather Sounds in Interiors.esp[X] Enhanced Weather - Sneak Bonus during Storms.esp[X] Fellout-Full.esp[X] Fellout-BrokenSteel.esp[X] Fellout-PointLookout.esp[X] Fellout-Zeta.esp[X] Destruction - CP - Fellout.esp[X] CRAFTHelper_Vanilla.esp[X] CRAFT - EnergyAmmo.esp[X] CRAFTHelper_EA.esp[X] CRAFTHelper_WCE.esp[X] CRAFTHelper_AS.esp[X] CRAFTHelper_ReplaceWorkbenchScript.esp[X] 5xlvling.esp[X] 1alexscorpionFPSanimations.esp[X] Built For The Future.esp[X] MZ-Weak-EbonTek.esp[X] Mannequin.esp[X] Clep Home.esp[ ] 0xlvling.esp[ ] Choose your own hairstyle (load this last on FOMM).esp[ ] Mart's Mutant Mod - CFW.esp[ ] Mart's Mutant Mod - XFO.esp[ ] CRAFT - WCE Warmonger Addon.esp[ ] CRAFTHelper_SBReconArmor.esp[ ] WeaponModKits - FWE Master Release.esp[ ] WeaponModKits - Zeta.esp[ ] WeaponModKits - FWE Optional Worn Weapons.esp[ ] Destruction - Main.esp[ ] Destruction - Main - Statics.esp[ ] Destruction - DLC.esp[ ] Destruction - DLC - Statics.esp[ ] Mart's Mutant Mod - FWE Master Release.esp[ ] Mart's Mutant Mod - FWE with EVE.esp