But with option one they are easier to defeat at higher levels. Why is that bad?
Option 1 is good, but if they show up as often as they say in interviews then it will become annoying if you have to run away from them for the first 20-30 hours of gameplay with no option to fight. Almost like cliffracers, only impossible to defeat. And most importantly I know Bethesda good enough to know that they won't do it that way. They don't want the player to run away all the time and they certainly don't want the player to wait dozens of hours before he can actually fight a dragon. But we'll see. I hope for option 1 with greatly reduced dragon encounters so they'll only attack you on rare occasions (but you may still see them flying by or attack other people, cities etc more often).