After performing an automatic load order sort using LOOT, the results seem very strange to me. Here is what it returned:
Fallout3.esm
CRAFT.esm
CALIBR.esm
Enhanced Weather - Rain and Snow.esm
FO3 Wanderers Edition - Main File.esm
BrokenSteel.esm
Anchorage.esm
ThePitt.esm
PointLookout.esm
Zeta.esm
Unofficial Fallout 3 Patch.esm
DCInteriors_ComboEdition.esm
Mart's Mutant Mod.esm
Project Beauty.esm
EVE.esm
FO3 Wanderers Edition - Alternate Travel.esp
Enhanced Weather - Rain and Snow in Fallout.esp
Enhanced Weather - Weather Sounds in Interiors.esp
Enhanced Weather - Sneak Bonus during Storms.esp
DarNifiedUIF3.esp
Mart's Mutant Mod - DC Interiors.esp
Enhanced Weather - REBOOT.esp
FO3 Wanderers Edition - Main File.esp
Flora Overhaul.esp
Fellout-Full.esp
Fellout-pipboylight.esp
FO3 Wanderers Edition - Followers Enhanced (BrokenSteel).esp
FO3 Wanderers Edition - DLC Broken Steel.esp
FO3 Wanderers Edition - DLC Point Lookout.esp
Blackened FWE + MMM + EVE + Project Beauty.esp
Project Beauty- Broken Steel.esp
FO3 Wanderers Edition - DLC Anchorage.esp
FO3 Wanderers Edition - DLC The Pitt.esp
UUF3P - FWE Patch.esp
Mart's Mutant Mod - Zones Respawn.esp
FO3 Wanderers Edition - DLC Mothership Zeta.esp
Delay ThePitt + Anchorage.esp
DelayAnchorage.esp
DelaySteel.esp
DelayThePitt.esp
delayzeta.esp
delaypl.esp
FO3 Wanderers Edition - Optional Restore Tracers (automatics only).esp
Mart's Mutant Mod - Natural Selection.esp
Mart's Mutant Mod - Tougher Traders.esp
megalight.esp
Project Beauty- Point Lookout.esp
Merged Patch.esp
Total active plugins: 48
Total plugins: 48
Does this seem correct to everyone? For starters, it placed DarNifiedUI further down the list than is recommended. It also seems to me that the main .esm and the DLCs should all come first, but it placed CRAFT and CALIBR right after the main .esm. And it placed the Blackened compatibility patch before some the the .esp files from the mods that the patch is supposed to affect. Another questionable item is placing the enhanced weather mods above Fellout, which I've been told should be reversed. The whole order seems to go against the recommendations from the instructions of most of these mods. Should I leave things the way it set them, or does some of this need rearranging? Just how reliable is LOOT?