After much reloading, and much resorting to letting Lydia tank while I threw out all the magic of scrolls I'd been saving, we finally downed both the caster and the centurion. (oh, I forgot to mention, I was out of health potions because in the room before I had to fight 3 of these spitting worm things that just wrecked me.. again, not sure why they sent me here at lvl 12)
Anyway, we barely made it, the bad things are dead. I look and make sure Lydia survived, she did miraculously, despite my indiscriminate sword and spell slinging. So, I saved the game and went about my merry way. Anyway, I get back to Whiterun, she's nowhere to be found... "oh well, she'll catch up" I tell myself. Yet, after a fast travel, resting in my bed and doing other quests... still no Lydia. I started to get a little worried.
Well I just finished a quest with Farkas, and returning to Breezehome from Jorrvaskr, I open the door and there is Lydia! Not only that, as I went upstairs, she greeted me, telling me how glad she was we were friends, and gave me a gift! Honestly, kinda made me feel all warm and fuzzy.
I <3 Lydia