Hi! Well, on my own experience, crackling was caused by frost spell (done by Illia, my personal friendly witch!). And, as noted in your message, sometime it isn't there and, after a fight (one she uses magic in) it comes back... I was annoyed very much by this also...
But, the modder that I am came up with a solution!
I just silenced the wav file (using an audio editor (aka goldwave)
What I did was to extract the wav from the bsa file and silence them using goldwave...
data\sound\fx\mag\icicle\mag_icicles_ready_lp.wav
data\sound\fx\mag\frostbite\mag_frostbite_drawsheathe_lpm.wav
data\sound\fx\mag\frostbite\wallnode\mag_frost_wallnode_01_lp.wav
data\sound\fx\mag\frostbite\wallnode\mag_frost_wallnode_02_lp.wav
I do not know exactly if it's all, or only one or the other... But, it's silent now so I do not care much!
If you are unable/don't know how to do it, just give me a whack and I'll zip it up and try to find somewhere to upload it (or simply send me a personal message with your email!)