How the heck did you get to those stats?? Not one of your skills is below 60?!?! (Btw, you didn't include Speech). And a dual upgraded ED-E? Something's not right here...
First off you do the Goodsprings level-up glitch, making sure you choose the right stats even on the setup you aren't going to keep. (So you can access the right perks, getting Light Touch and In Shining Armor as level 2 and 4 perks takes a little planning).
When you actually build your character you have to allow for the points that come from the skill books. (I used Comprehension to boost this, it pays offwhen you find all of the books.) You also have to allow for the extra points that come from the implants you buy to boost your S.P.E.C.I.A.L. stats.
Also if you want to get the best specials, you have to create a character that severely sacrifices AGI in the beginning, waiting to get to DM and the vending machine glitch before you can raise it. (You also have to allow for the extra points in guns and sneak that come from another 9 in your S.P.E.C.I.A.L AGI, 1 from implant, a further 8 from DM..)
My skills are all legit but it did indeed take a lot of planning and was pretty time consuming...
Dual upgrading ED-E is simple. All you have to do is apply the BoS upgrade to him, then take him across the raft to the Fort and when you leave he'll have lost a little inventory space but he will have gained the improved weapon also..