Just uploaded a new set of rules (breaking 1MB in size! pretty large for a plain text file). Details:

NEW
Adventurers [Adam]
Animal Loot Mod [Sendai45]
Balanced Scales [IXth Crusade]
Balmora Expansion - No Ambient and Corpus Spells Addon [Unknown]
Definitive Birthsigns Pack 1.1 [Doy and IceNine0]
Definitive Birthsigns Redux Patch [Pluto]
Definitive Birthsigns Unofficial Patch [Eisenfaust]
HELLUVA Balanced 2.3 [Spiffyman]
Herbalism [balor, modified by Shanjaq]
Herbalism Lite for Tamriel Rebuilt [Tealpanda]
Herbalism mods [Various]
Herbalism Redux + Explorers Wilderness Compatibility [Mode_Locrian]
JMK Gems Leveled [Crankgorilla]
JMK's Gems Addition [JMK22]
Morrowind Un-mod [scifiguy52]
Muck Shovel Use [quorn]
Nerevarine Greetings Tweaks [Glassboy]
ReBirth Grass 0.01 [Hordane]
Silt Striders Are In Vvardenfell [lochnarus]
TR1_Herbalism (Tamriel Rebuilt/Herbalism) [tek_604]
Ultra Light Herbalism [Qwert]
Vurt's Corals [Vurt]

UPDATED
Advanced Herbalism [andoreth]
Animated Practice Dummies [AcidBasick]
Appropriate Greetings 1.5.2 [Arcimaestro Antares]
Assassination [DragoonWraith]*
Balmora Expanded and Forested MW compatibility [Sintek]
Bank Mod [Indestructible, Kir, Havokk and Shadow_unk]*
Definitive Birthsigns Redux Patch [Pluto]
Definitive Birthsigns Unofficial Patch [Eisenfaust]
Devil's Rock for Vivec's Soul [Illtempered]*
DNGDR - Darknut's Greater Dwemer Ruins [Darknut]*
Erengard Mines-MC Compatible [Graphite and Denina]
Exotics Boutique 1.1 [TommyKhajiit]*
Expanded Sounds [PirateLord]
Explorers 2.5 [Lord Lionmane]
Grandmaster of Hlaalu [Lady Galadriel]
Graphic Herbalism [ManaUser]
HELLUVA Awesome Armor [Sandman101 and friends]
HELLUVA Merchant Containers [Sandman101 and friends]
Herbalism [balor]
Herbalism for Purists [Syclonix]
Herbalism Lite v1.0 [Shakeidas]
Herbalism Redux 1.12a [Mode_Locrian]
Hold It 1.9 [Danae]
Improved Morag Tong Grandmaster [PetrusOctavianus]*
Kat's Kastle*
Kirel's Interior Weather [Kirel]
Laura Craft Romance and Adventure mod ver 2.2 [Emma]*
Magicka regeneration mods [Various]
Max's Quest Fixes Mod [Max a.k.a. ~NOBODY~]*
MCA - Morrowind Comes Alive [Neoptolemus]*
MCA Lore Correct 5.1 [Denunci]*
Minerals [evelas]
Morrowind Advanced [Gary Noonan/WormGod]
Morrowind Crafting 2.1 [Drac & Toccatta]
Morrowind Inhabitants [scruggs]
Morrowind Rebirth [Trancemaster_1988]
MTT (Magical Trinkets of Tamriel) [Chris Woods]
New Suran Extended 1.52 [Nicholiathan]*
Poorly Placed Object Fix [Slartibartfast]
Real Wildlife 2b [Nedius]
Sadrith Mora - Closed City [The Bloodthirsty Crustacean]
Service Requirements [Vanhikes, some updates by makeshiftwings]*
Ships of the Imperial Navy [Neoptolemus]*
Silt Striders Are In Vvardenfell [lochnarus]
Suran Underworld 2.5 [Matthew]*
Teleport Ring 3.3.5 [Tealpanda, Eidolon, Dubious]
The Black Mill 1.1 [Bilbo WillowTree]*

Those marked with an asterix are just URL updates from ElricM to MMH.

Thanks this time to trancemaster_1988 for further help with rules for Morrowind Rebirth, big thanks to Hordane for finding all of the broken links to ElricM-hosted mods.

Not done: JH2011's http://www.gamesas.com/topic/1398805-relz-mlox-a-tool-for-anolyzing-and-sorting-your-load-order/page__view__findpost__p__21698623, Melchior Dahrk's White Suran 2 - MD Edition, updating the UMP/MPP section, adding wolli's Suran Underworld 3 or Trainwiz's Main Quest Enhancers.

Great work, Dragon32. Thanks.

Morrowind Comes Alive is still showing that it needs TR_Map1.esm and TR_Map2.esm, even after adding the patch. I'm going to try again , though. Or do I need a new set of rules?

also, when I go to http://code.google.com/p/mlox/wiki/Mlox I get a cookie mismatch in every browser.

Are you referring to "MCA - TR Addon.esp"? I believe we still need to update that rule for TR Sacred East. We'll try to address it in the next release of the rules.

I don't know what "cookie mismatch" means, and there's probably nothing I can do about it as that server is run by google. I don't get any errors on that page. I'd suggest checking your cookie settings, allow cookies from google.com if not already doing so, delete old cookies, check to see if you have any browser extensions that interfere with cookies, and so on.

If you use these three mod components, the load order should be like this:

NPC LCV Schedules 03.esp

NPC LCV Locks.esp

LCV Wolverine Hall 01.esp

The default load order moves at least one door (the one nearest to the Divine Intervention marker) halfway down into the floor.