For the longest time, I played pure vanilla, and became quite accustomed to how it played. I recently installed a good number of mods, mostly cosmetic in nature, and haven't since had a single random Dragon encounter. This is annoying; I can't unlock my shouts.
First off, with my current playthrough, I took the main quest up to where I meet Delphine, and then told her "I don't have time for this." This should have affected anything, as previous characters have encountered plenty of dragons prior to this point (even during that first hike up to High Hrothgar).
I have the following new plugins installed (via Nexus Mod Manager):
* ApachiiHair
* ClimatesOfT%amriel
* StaticMeshImprovementMod
* StaticMeshImprovementMod-DragonbornTernFix
* Radiant and Unique Potions
* SkyUI
* iHud
* Book Covers Skyrim
* ethereal_elven_overhaul
* Purewaters
None of these mods should have affected the rate of Dragon spawn, I don't think. Could one of them be the culprit, or is there perhaps something else I'm overlooking?