Most underground sections and the Dwemer ruins also creep me out. Because of the constant clanking and steam hissing you usually don't notice what's coming.
Biggest poop in tha pants moments was in a Dwemer ruin where I had to open a huge door by removing debris stuck in gears. The door finally opened so I scamper happily up the ramp towards it and lo and behold what comes out of the darkened passage behind it? A Steam Centurion O_o
Being a level 6 mage I ran until my pointy ears were flat from wind erosion.