Happened to me aswell, although only the first time I tried to unlock stuff.. Unlocked 3 perks, flashgrenade and holosight for the SCAR, joined a game - perks didn't seem to be working so I left the game, noticed all the stuff I previously unlocked was still equipped on my character, but I could still unlock them. Tried unlocking them again and now they stay passive, problem is I don't know wether or not the points I spent were refunded, so I'm not sure wether I spent 2x points for every unlock..