So I've just spotted http://www.nexusmods.com/skyrim/mods/52363/? and thought I'd raise some awareness here before things get out of hand like they did the last time.
Hopefully someone who knows more about the .ess format/nature of these programs can look further into this and possibly get in touch with the author. The lack of documentation makes me very suspect of the tool's claims and I'd hate to see a repeat of the last time one of these tools came into the spotlight.
To the less informed: Be very wary of these tools. There's a high possibility they could break your save files, even if not immediately obvious. Skyrim's engine was not made to inherently support the uninstallation of mods mid play through. If you do decide to try this out, make a backup of your save file first as indicated by the mod author.