You know what? I've done trying & resolved to using a trainer to add nano catalysts that has disappeared. Every time I restart the game, it show 000 again.
For people who can't stand it anymore, just use a trainer. I recommend dR.oLLe's v1.1 +9 trainer.
Finally, I can play the game in peace without breaking a pencil!!!
Thanks to Crytek for a great game with bugs which they are/aren't to be blame! I will sit on the fence for this case. You guys decide...