Yes, maybe it needed some time...myself, for that reason I'm waiting for the CK to be released before doing the "definitive" version of my main character (and by definitive, I mean the one I'll spend literally hundreds of hours, that will have a custom house, armor, weapons..., and will play tons of questmods). That way I'll be able to workaround bugs on the fly as I play him.
Fortunately I already was able to use the console to remove some annoying quest items that I'd never give away, in order to have my inventory crystal clean. That's already something
