Hi, after installing Refurbish[MZ] I no longer get the pop-up and the radio signal but I get the quest immediately which shows me where I need to go anyway. I was under the impression that you acquire the quest after you get the signal otherwise it is kind of pointless since the quest marker shows you where you need to go.
Something wrong with your game
In my case
-Before the Refubrish Mothership signal was suppressed by DelayZeta mod
-I unload delay Zeta and load Refubrish
-signal still to be suppressed, no quests, no messages
-When I approach crash site I receive signal, no quests, no messages, no markers
-When I step into the crash site- I was teleported to the mothership and after few dialogs only Quest was begin.
So- it seems all work just fine for me.
May be you have conflicting mod after refubrish, which modify DLC's Zeta beginning?
PS- I olay with FWE MR2, use alternative start