This is my complete list! (And yes, I have a few large land mods in the list, too!) So please tell me which order it should be in!

The list of mods I'm using! (along with the usual Oblivion, Knight of the Nine, and Shivering Isles esms!)

Oblivion.esm

Skyrim.esm

CyrodiilUpgradeResourcePack.esm

Toaster Says Share v3.esm

nVidia Black Screen Fix.esp

DLCShiveringIsles.esp

007camera.esp

shiveringislesdoorusable.esp

Catsuit.esp

pale_rider's Hats.esp

HGEC_BodyGlove.esp

eyja.esp

NewSheothManor.esp

Nascosto Isles 3.esp

Knights.esp

The Lost Spires.esp

ElsweyrAnequina.esp

Skyrim.esp

West Roads.esp

Seph's new animations.esp

actors_in_charge.esp

ActorsInMadness.esp

ActorsInEmotions.esp

77_Umpa_Animation.esp

shinyEmotions.esp

_Ren_BeautyPack_onlyhairs.esp

_Ren_BeautyPack_full.esp

TSS Custom Companion Template.esp

Toaster Says Share.esp

Toaster Says Share Faction Recruitment.esp

Bashed Patch, 0.esp

-----------------------------------------------------------------
Unrecognised mod files:
Reorder these by hand using your favourite mod ordering utility.
-----------------------------------------------------------------

Unknown mod file: Republic_of_Morsepolis01.esp
Unknown mod file: cassie_completehairandeyes.esp
Unknown mod file: AAAEmptyRoom.esp
Unknown mod file: Green Room (Modded JQ Studio).esp
Unknown mod file: Guitar ENG.esp
Unknown mod file: shaderbrowser.esp
Unknown mod file: 77_Umpa_Disco.esp
Unknown mod file: Black Beard Races.esp
Unknown mod file: Brown Beard Races.esp
Unknown mod file: Blonde Beard Races.esp
Unknown mod file: Gray Beard Races.esp
Unknown mod file: Red Beard Races.esp
Unknown mod file: Blonde Viking Beard Races.esp
Unknown mod file: Red Viking Beard Races.esp
Unknown mod file: Gray Wizard Beard Races.esp
Unknown mod file: Brown Goatee Races.esp
Unknown mod file: Brown Mustache Races.esp
Unknown mod file: Blonde Goatee Races.esp
Unknown mod file: Black Viking Beard Races.esp
Unknown mod file: Brown Viking Beard Races.esp
Unknown mod file: Gray Viking Beard Races.esp
Unknown mod file: Black Goatee Races.esp
Unknown mod file: Gray Goatee Races.esp
Unknown mod file: Red Goatee Races.esp
Unknown mod file: Blonde Mustache Races.esp
Unknown mod file: Black Mustache Races.esp
Unknown mod file: Gray Mustache Races.esp
Unknown mod file: Red Mustache Races.esp
Unknown mod file: Black Wizard Beard Races.esp
Unknown mod file: Blonde Wizard Beard Races.esp
Unknown mod file: Brown Wizard Beard Races.esp
Unknown mod file: Red Wizard Beard Races.esp
Unknown mod file: BKMask.esp
Unknown mod file: Collectible T-Shirts V1.0.esp
Unknown mod file: Drachenwald_Beta2.1.esp
Unknown mod file: rabiator.esp

Your best bet would be to go over to the http://www.gamesas.com/index.php?/topic/1096264-boss-better-oblivion-sorting-software/page__st__60 and report your unknowns (and preferably a link to where they come from.) That way they can add them to their masterlist in the most appropriate order.

They are usually pretty quick at it as well.