I figured out the basics of compiling a bashed patch. First, find Mopy -> Extras -> Bashed Patch, 0.esp and copy this into your Data Folder. Second, go into Wyre Bash and right-click and choose Rebuild Patch on the drop down. Lastly, scroll down and go through the lists of what needs merging and click "Build Patch" when done.
This is derived from the http://devnull.sweetdanger.net/fcominstall.html the Bashed Patch section, somewhat vague but a has a good idea of what to do.
Edit: Also, make sure this is loaded last in your load order (the Bashed Patch, 0.esp is loaded last);
awesome stream :celebration: .