So my question, once upon a time I'm quite sure I used BSA-alteration on quite a lot of BSAs, that I have since repackaged into BAIN. Could that be why it's working on the old install, where I initially used BSA-alteration, and not on the fresh install (since that one won't have BSA-alteration on vanilla and Shivering Isles BSAs)? If that's the case then I could sort it out by installing the original BSAs again and just repackage them again, which isn't a huge deal albeit slightly timeconsuming - but I would like to hear if people think it would work first.
I have had this happen once before on my 2nd install but time I didn't think more about it and simply used BSA-alteration again so those vanilla/SI files also used it, and it worked - so I think I am on to something, but I'm not 100% sure if BSA-alteration could do this.