Lots of questions in there, will try to answer what I can.
If you work for Caesar, the primary groups you will be denied quests for are House and the NCR. The Legion will eventually want you to wipe out the Brotherhood of Steel, too, but seem to ignore most other factions as far as their questline is concerned (you can get the Boomers to help them too). The Legion is basically hostile to everyone except the Great Khans when the player comes into the picture. You can do quests for almost everyone else besides the NCR and Mr House, although causing the Great Khans to abandon the alliance with Caesar may cause problems, likewise killing Vulpes at any point will deny you a questline or two.
As far as Goodsprings goes, you have to make the choice when you pick up the quest if you are helping Ringo or Joe Cobb. Once you finish the first step of the quest for one side, you are pretty much locked out of helping the other side (Cobb wants you to kill Ringo first). Going back and just killing people will do nothing but get the town angry at you and deny you several vendors, there are no NPCs you can kill to farm positive rep with a faction, NPCs on factions only cause you to lose rep with their specific group when you kill them. The quests are considered mutually exclusive, much like the quests for Nelson/Forlorn Hope.