There are several paths through the quest, one of which is selling out the slaves to the slavers.
However for that to happen I think your character needs to know where the slaves are. So maybe you told the slavers and forgot, or maybe it was a bug. More info:
http://fallout.wikia.com/wiki/Head_of_state
Ok, I think it must be a bug - he first asked me where (or what) Paradise Falls was, I said no, (probably irrelevant) and I think he tasked me with finding Hannibal/the escaped slaves (sketchy memory), but I had no idea of their location and so I don't think I possibly could have told them where they were. And I have no memory of doing so. So
hopefully the 'setstage' command will put it all right, thanks.