I've seen a tip that says if you store items in someone else's container they may not be there later on. I assume that means if you put something in an empty box in an NPC's store they may take it, or if you put an item in the fridge of an abandon house the game may decide that some NPC has found it.
In Megaton I have seen that there is an empty house that requires a key to enter. Once you get the key, does that house become yours for sleeping and storage?
Thanks again for the great help everyone.