Kind of hard to read what you wrote, but I think I understand what you're asking....
Are you playing your mod with a save game that has already interacted with these cells?
Don't do that.
Unless you Update and Repair your save in Wrye Mash after each session in the CS. (but even then, some info might not get displayed correctly)
To be certain this is your issue, start a New Game and see if the doors are working.
The safest way to test a mod is to have a Save file set aside for repeat testing purposes. One that hasn't interacted with your mod yet, so you exit the game without saving after each test run.