Everything - I have 11 (or 12?) storage-able containers in my Whiterun house. Each is for a special category, like ingrediants for alchemy, armor, jewelry, clothes, etc...
The only things I don't grab from dungeons are baskets and vases and such lying around. Trying to get one of every weapon and armor.
My white run house is fully upgraded but, I swears not much more than 5 places to store items in it?
Maybe there is, in spare rooms etc, however I dont like the idea of different items all round the house. What I a really want is a good storage room with a few chests.
What does the Solitude house offer? Im at 20k, dontk now whether to get the 35k and upgrade a solitude house or just go for the 100k achievement on 360 first.
As for items, anything enchanted, the bedside chest is rammed of all things enchanted. If I have jewellery that isnt enchanted I do it myself or sell it.
I suppose I also collect the bones and scales as well, but only because I cant use them yet. Also store my gems.