Are they invincible? Tried killing them to see how strong they were, and they just crouch like important NPC's do, but when I kept hitting them, they don't die?
You've gotten yourself to a point at which they are necessary for your current, or future, quests. Had you made other choices, they would definitely not be invincible.
No not at all, they are companions. I have completed the DB questline, all I have now are missions from the Night Mother, which are the randomly generated ones. Nothing to do with the initiates.