2 daggers is twice as much damage.
Then if you get the Dual Wield power attack perk it is even more than twice as much damage.
So yeah.
The downside of 2 daggers is that you don't get the cool assassination kill animation.
I get the slit throat animation all the time with dual daggers, just need to decide when to do it. There are some monsters that wont die to a single dagger sneak attack, so in that case you use dual power attack, for those who will die just use a single dagger attack and you get the animation.