I've turned all my mods off (I don't even use very many) and it still happens, but it is very annoying as I can't reach some areas of the game because of the big impassable holes in the ground. http://i13.photobucket.com/albums/a288/sinderelly/Fallout/fallout3_missingterrain.jpg. You can still see the distant lod terrain in the hole, but if I walk forward I will fall straight through that into a giant gray box with water that is impossible to get out of. I just ignored the first two that I found because while inconvenient they were mostly in the middle of nowhere, however this one is completely preventing me from reaching that door you can see floating there.
If anyone knows how I can resolve this I would appreciate it, thank you.