I prefer the Perforator.
With my previous just-died character, she had a Small Guns of 90. Having not yet gone to Point Lookout for the game-killing perk, Perforator does about 40 damage as opposed to the Infiltrator which only gives 35.
In all my time playing FO3, the Perforator always has a higher damage than the other. What's awesome is giving a follower the Chinese Sneak Suit, and the Infiltrator. Keep the Perforator for yourself.