Well, ALMSIVI is specific to Almalexia+SothaSil+Vivec (the Tribunal). These were gods specific to the Morrowind province. They were also kind of gone after Morrowind (game).
I'm not sure about Divine Intervention. Mark and Recall were also gone. I don't think Divine Intervention was really a divine spell anyway. It was just a specific Mark/Recall spell with divine flavor. I can't think of a Lore reason for this one.
Just like there are priestly healing spells, which are just regular healing spells with divine labels. Just flavor. I don't think TES really follows other RPGs that seperate priest spells and mage spells. They are all the same in TES. Priests and mages are basically using the same tools with different trappings/flavor.
We also got Fast Travel post-Morrowind (cue FT haters, gonna hate
)