If you have two mods trying to edit the same object, the one which is loaded latest will win out (your modification). The only way that I know of to circumvent this is by merging objects.
http://www.gamesas.com/topic/1367045-smartmerger-3/ is a fairly new tool which looks promising; though I have no experience with it. You may want to investigate merging the objects from your mod with the other mod using SmartMerger.