FPS Optimizer has an option to magnify the User Interface. It's on the Misc2 tab, look for the slider at the bottom. It's a little touchy, sometimes I have to have Morrowind load from a save to get it working, so it's not perfect, but it kind of does the job.
You can also choose a more readable font, I use the following in my Morrowind.ini:
[Fonts]
Font 0=century_gothic_font_regular
Font 1=century_gothic_font_regular
Font 2=daedric_font