This belongs in Fallout 4 Speculations Suggestions and Ideas, but as that is locked at the time of this posting, and I feel inspired to reply to this, here goes. Mods do lock or merge or whatever as you see fit.
I would not exactly say that I am a convert to your idea. But provided it is executed well and in the manner you have outlined, and the deadlines are not arbitrary and detached from the story, I could live with that. I just don't want to end up locked out of the main quest line. Point well stated.