I haven't really cared to learn the "soul trapping" mechanic in Skyrim. I know that captured souls are used to recharge magic weapons but because I rarely use those (are magic weapons even essential?) I haven't put much weight to learning the mechanic. There are already so many different spells and mechanics in the game that everything new and distinct feels overwhelming.
I've considered using Spell Eraser utility.
http://www.nexusmods.com/skyrim/mods/18096/?