I think we could see Mannimarco if a game were in Hammerfell. I doubt he'd have much of a presence in the ongoing conflict, other than perhaps using Sload to help him collect casualties from the battles. Still, I don't even think there would be a war in Hammerfell. I think that would probably be reserved for the final game in the arc.
In Daggerfall, as far as I'm aware, Mannimarco's fortress was in Hammerfell. We'll probably definitely at least see the ruins of his old keep. I don't see why they wouldn't bring him back, though (in the event of the game being there), considering that the Sload are supposed to be prominent enemies in Hammerfell and would probably worship him heavily. Honestly, I'd support them making the entire order of the black worm joinable.
Also, I think largely it depends on how the ongoing war is depicted. For now, I approve of small, espionage-like conflicts and perhaps pro-Thalmor terrorism taking place at random locations in the games until the final part of the arc. I think a full-on series of battles taking place at worst could be done similarly to Skyrim, but at best, could be done much better. We also have to think about how much technology will develop by 2 - 3 TES games from now. That's probably about a minimum of maybe 15 years away. I think they'll be a lot more capable of pulling something high-scale off and for it to be rewarding in around this time.
I think the best thing that should happen regarding the overarching plotline for the time being, are numerous espionage and conspiracy-related things. Collectively, they could add a climate of paranoia (especially if betrayal, corrupt politics, and spies were something portrayed well) and political creepiness. I also think it would be interesting and really creepy to have an occasional "Thalmor interrogation/experimentation camp" pop up, or something of the sort, where people are tortured and experimented on using magic and magical technology by Thalmor agents.