I just discovered Bunker Hill and after speaking to the lady who lets you in, there is a ghoul named Edward Deegan who is hostile and trying to kill me. I thought it may have been my super mutant companion that triggered him, but after reloading and entering without the companion, he was still trying to kill me. I was in the middle of a conversation with one of the traders when he started shooting me in the back.
No one else in this area is hostile and I think it may be a bug. Not sure what to do as I need to speak to Old Man Stockton to continue the Boston After Dark quest. He can't be killed. When his health drops to zero he falls to the ground for a moment before standing back up and resuming his assault.
http://youtu.be/OIZPt3scZn4