Listed here are multiple bugs that I have encountered after days of playing. I have multiple save files so that I can trophy farm, and hard save often and move the files to a USB as a backup. I will list the bugs that I have come across, as some of them I have not seen posted. I have completed the game for one faction, and now I'm working on The Railroad and BoS.
1. Unable to complete quest Underground Undercover. I have progressed far enough that I can now start the Mass Fusion quest after the meeting, and no character interacts with me to start the final step of Underground Undercover after "Continue working with Father".
2. Unable to turn in quest Mercer Safehouse. PAM is in lockdown mode and is 100% unable to be interacted with. No other quests being completed resolves this issue.
3. The BIGGEST bug that I am running into currently is for quest Tactical Thinking. Upon entering the church, I am met with multiple enemies. After fighting through these waves of enemies, I come to the end of the hallway where a scribe informs me that charges have been placed. I turn, and there are no charges placed to gain entry into RR HQ. Backtracking to the top floor, I am met by Deacon standing in the main area shooting me as if he appeared by some form of witchcraft. Unable to progress through this mission to reach end game content.
4. After saving the life of Danse, he is unable to be interacted with and yo are unable to gain the items that you have stored on the character. He was a mule that is unable to be interacted with at all now.
2-3 of these are blocking completion of the game at all, and I am stuck waiting for a patch to hopefully arrive sometime soon so that I may continue on my journey. Hopefully something is done, and I have submitted bu reports for these. If anyone has come across these or knows how to fix them, please let me know.