This theory is assuming that the game doesn't take place in 2277, but a little bit later.
Fallout 3 was a set up for Fallout 4. In it, we are introduced to Lyon's BoS Chapter, shatter the Enclave, and are introduced to Two factions from the Institute, the Railroad and the Scientists at the Institute itself. maybe the reason we don't visit the Commonwealth as the LW is because it's not his tale to tell. Visiting the Pitt makes sense as it can be seen as a resource for making new items for DC. Operation Anchorage shows the Outcasts having internal strife, and Broken Steel shows that on top of scattering the Enclave Remnants, the CWBoS is gaining strength and is now starting to help the major settlements of the CW. Not much to tell from Point Lookout other than there are boats capable of making the trek to the Commonwealth
Fallout 4 is based in Boston, and it's centerpiece is the Commonwealth set that we've been given. We play as a different character who has a different tale to tell, and (hopefully) we'll learn the repercussions of the Lone Wanderer. It's a place that we've only gotten hints at what struggles are happening, the sudden appearance of a more militarized BoS probably means a new Leader, probably taking the loot from Adams Air base and is now ready to expand.
The theory is that is is the Story Bethesda has wanted to tell with the Franchise. Whatever is going on in Todd's mind, we're about to see it.