Underwater. Fully functional, but they can not come to the surface.
Cave. Why no one didn't escaped into some deep cave?
Billionaire vault. This was mentioned in the game. Paranoid billionaire has made his private shelter. But no one did not survive long enough to have descendants. It would be nice to have: Gatestown, Trumpcity, Zuckerbergville...
Space Station. Also mentioned in the game. What happened to them? Are they still alive? Do they even exist?
Secret vault. Vault without number. Made by the Vault-tec, without knowledge of government.
Aircraft carrier. Ship's captain decided to remain at sea, with the 6000 crew members.
Cryonics Institute. Totally not related to the war, there was deep freeze experiment . Because of the war, this experiment was disrupted. Now Institute ran out of energy and everyone wake up in a new world.